The fasta command

The organelle assembler’s fasta is a simple utility command that outputs all the stems of the compacted assembly graph as a collection of sequences in fasta format.

command prototype

usage: oa fasta [-h]
                index [<output>]

positional arguments

index

index root filename (produced by the oa index command)

output

output prefix

optional arguments

General option

-h, --help

show the help message and exit